- sushie.io.output_alphas(result: List[SushieResult], snps: DataFrame, output: str, trait: str, compress: bool, method_type: str, purity: float) DataFrame[source]
Output full credible set (before pruning for purity) file
*alphas.tsv(see Full Credible Set with Alphas).- Parameters:
- result: List[SushieResult]¶
The sushie inference result.
- snps: DataFrame¶
The SNP information table.
- output: str¶
The output file prefix.
- trait: str¶
The trait name better for post-hoc analysis index.
- compress: bool¶
The indicator whether to compress the output files.
- method_type: str¶
Which method the result belongs to: sushie, mega, or meta.
- purity: float¶
The purity threshold.
- Returns:
A data frame that outputs to the
*alphas.tsvfile (pd.DataFrame).- Return type:
pd.DataFrame
Last update:
Oct 27, 2024