Fix the bug for OLS to compute adjusted r squared.
0.12
Update io.corr function so that report all the correlation results no matter cs is pruned or not.
0.13
Add --keep command to enable user to specify a file that contains the subjects ID SuShiE will perform on. Add --ancestry_index command to enable user to specify a file that contains the ancestry index for fine-mapping. With this, user can input single phenotype, genotype, and covariate file that contains all the subjects across ancestries. Implement padding to increase inference time. Record elbo at each iteration and can access it in the infer.SuShiEResult object. The alphas table now outputs the average purity and KL divergence for each L. Change --kl_threshold to --divergence. Add --maf command to remove SNPs that less than minor allele frequency threshold within each ancestry. Add --max_select command to randomly select maximum number of SNPs to compute purity to avoid unnecessary memory spending. Add a QC function to remove duplicated SNPs.
0.14
Remove KL-Divergence pruning. Enhance command line appearance and improve the output files contents. Fix small bugs on multivariate KL.