Define the raw data object for the future data cleaning.

Variables:

bim : pandas.core.frame.DataFrame

SNP information data.

fam : pandas.core.frame.DataFrame

individual information data.

bed : jax.Array

actual genotype data.

pheno : pandas.core.frame.DataFrame

phenotype data.

covar : pandas.core.frame.DataFrame | None

covariate needed to be adjusted in the inference.

IO Public-members¶

static RawData(_cls, bim: DataFrame, fam: DataFrame, bed, ...)

Create new instance of RawData(bim, fam, bed, pheno, covar)

__repr__()

Return a nicely formatted representation string

__getnewargs__()

Return self as a plain tuple. Used by copy and pickle.