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jaxQTL

Input formats

mancusolab/jaxqtl

jaxQTL

mancusolab/jaxqtl

jaxQTL
User guide
User guide
- Getting started
  Getting started
- Data preparation
  Data preparation
- Run and interpret scans
  Run and interpret scans
- Methods and troubleshooting
  Methods and troubleshooting
Command and output reference
Command and output reference
- Command-line interface
- Output schemas
Python API reference
Python API reference
- Mapping
  Mapping
  - Cis and nominal mapping
  - Trans mapping
- Hypothesis testing
  Hypothesis testing
  - Variant-level tests
  - Gene-level aggregation
- Models and distributions
  Models and distributions
- Input/output
  Input/output
- Advanced numerics
  Advanced numerics
Project
Project

Input formats¤

The data preparation guides define the supported file contracts: